Pseudomonas syringae pv. tomato DC3000, PSPTO_4113

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4113
NCBI Old Locus Tag	PSPTO4113
Name	Synonym: PSPTO4113
Replicon	chromosome
Genomic location	4636922 - 4637602 (+ strand)

Cross-References

RefSeq	NP_793874.1
GI	28871255
Entrez	1185793
INSDC	AAO57569.1
NCBI Locus Tag	PSPTO_4113
NCBI Old Locus Tag	PSPTO4113
UniParc	UPI00000091C9
UniProtKB Acc	Q87XR3
UniProtKB ID	Q87XR3_PSESM
UniRef100	UniRef100_Q87XR3
UniRef50	UniRef50_Q88NS0
UniRef90	UniRef90_Q87XR3

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7)	1.56
Kyte-Doolittle Hydrophobicity Value	-0.370
Molecular Weight (kDa)	24.6
Isoelectric Point (pI)	7.86

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 4 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001026 (424 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4113 Search term: lipoprotein

Human Homologs

References