Pseudomonas syringae pv. tomato DC3000, PSPTO_4115

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4115
NCBI Old Locus Tag	PSPTO4115
Name	Synonym: PSPTO4115
Replicon	chromosome
Genomic location	4639663 - 4640127 (- strand)

Cross-References

RefSeq	NP_793876.1
GI	28871257
Entrez	1185795
INSDC	AAO57571.1
NCBI Locus Tag	PSPTO_4115
NCBI Old Locus Tag	PSPTO4115
UniParc	UPI00000091CB
UniProtKB Acc	Q87XR1
UniProtKB ID	Q87XR1_PSESM
UniRef100	UniRef100_Q87XR1
UniRef50	UniRef50_Q5P6X1
UniRef90	UniRef90_Q87XR1

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein SlyB
Synonyms
Evidence for Translation
Charge (pH 7)	2.20
Kyte-Doolittle Hydrophobicity Value	0.086
Molecular Weight (kDa)	15.8
Isoelectric Point (pI)	9.25

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 82 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001015 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4115 Search term: lipoprotein SlyB

Human Homologs

References