Pseudomonas syringae pv. tomato DC3000, PSPTO_4135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000
GCF_000007805.1|latest
Locus Tag
PSPTO_4135
NCBI Old Locus TagPSPTO4135
Name
Synonym: PSPTO4135
Replicon chromosome
Genomic location 4661176 - 4662891 (+ strand)

Cross-References

RefSeq NP_793896.1
GI 28871277
Entrez 1185815
INSDC AAO57591.1
NCBI Locus Tag PSPTO_4135
NCBI Old Locus Tag PSPTO4135
UniParc UPI00000091DF
UniProtKB Acc Q87XP1
UniProtKB ID Q87XP1_PSESM
UniRef100 UniRef100_Q87XP1
UniRef50 UniRef50_Q13MP2
UniRef90 UniRef90_Q48LS6

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7) -8.89
Kyte-Doolittle Hydrophobicity Value -0.267
Molecular Weight (kDa) 64.1
Isoelectric Point (pI) 5.45

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 243 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015267 (193 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4135

Human Homologs

References

No references are associated with this feature.