Pseudomonas syringae pv. tomato DC3000, PSPTO_4141

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4141
NCBI Old Locus Tag	PSPTO4141
Name	Synonym: PSPTO4141
Replicon	chromosome
Genomic location	4667817 - 4670327 (+ strand)

Cross-References

RefSeq	NP_793902.1
GI	28871283
Entrez	1185821
INSDC	AAO57597.1
NCBI Locus Tag	PSPTO_4141
NCBI Old Locus Tag	PSPTO4141
UniParc	UPI00000091E5
UniProtKB Acc	Q87XN5
UniProtKB ID	Q87XN5_PSESM
UniRef100	UniRef100_Q87XN5
UniRef50	UniRef50_E2XMV4
UniRef90	UniRef90_D7I4K7

Product

Feature Type	CDS
Coding Frame	1
Product Name	helicase domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	13.80
Kyte-Doolittle Hydrophobicity Value	-0.160
Molecular Weight (kDa)	92.5
Isoelectric Point (pI)	9.76

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 399 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015266 (161 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4141 Search term: helicase domain-containing protein

Human Homologs

References