Pseudomonas syringae pv. tomato DC3000, PSPTO_4853

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4853
NCBI Old Locus Tag	PSPTO4853
Name	Synonym: PSPTO4853
Replicon	chromosome
Genomic location	5498405 - 5499661 (+ strand)

Cross-References

RefSeq	NP_794587.1
GI	28871968
Entrez	1186536
INSDC	AAO58282.1
NCBI Locus Tag	PSPTO_4853
NCBI Old Locus Tag	PSPTO4853
UniParc	UPI000000946E
UniProtKB Acc	Q87VT2
UniProtKB ID	Q87VT2_PSESM
UniRef100	UniRef100_Q87VT2
UniRef50	UniRef50_Q48DI9
UniRef90	UniRef90_Q48DI9

Product

Feature Type	CDS
Coding Frame	1
Product Name	type II/IV secretion system protein
Synonyms
Evidence for Translation
Charge (pH 7)	-3.45
Kyte-Doolittle Hydrophobicity Value	-0.110
Molecular Weight (kDa)	46.3
Isoelectric Point (pI)	6.45

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 563 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003903 (475 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4853 Search term: type II/IV secretion system protein

Human Homologs

References