Pseudomonas syringae pv. tomato DC3000, PSPTO_4883

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4883
NCBI Old Locus TagPSPTO4883
Name
Synonym: PSPTO4883
Replicon chromosome
Genomic location 5529806 - 5531179 (+ strand)

Cross-References

RefSeq NP_794617.1
GI 28871998
Entrez 1186566
INSDC AAO58312.1
NCBI Locus Tag PSPTO_4883
NCBI Old Locus Tag PSPTO4883
UniParc UPI000000948C
UniProtKB Acc Q87VQ2
UniProtKB ID Q87VQ2_PSESM
UniRef100 UniRef100_Q87VQ2
UniRef50 UniRef50_G8Q520
UniRef90 UniRef90_Q87VQ2

Product

Feature Type CDS
Coding Frame 1
Product Name
membrane protein
Synonyms
Evidence for Translation
Charge (pH 7) 5.61
Kyte-Doolittle Hydrophobicity Value 0.243
Molecular Weight (kDa) 50.7
Isoelectric Point (pI) 9.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 184 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001877 (505 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4883
Search term: membrane protein

Human Homologs

References

No references are associated with this feature.