Pseudomonas syringae pv. tomato DC3000, PSPTO_4999

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4999
NCBI Old Locus Tag	PSPTO4999
Name	Synonym: PSPTO4999
Replicon	chromosome
Genomic location	5678460 - 5679194 (- strand)

Cross-References

RefSeq	NP_794732.1
GI	28872113
Entrez	1186684
INSDC	AAO58427.1
NCBI Locus Tag	PSPTO_4999
NCBI Old Locus Tag	PSPTO4999
UniParc	UPI00000094FC
UniProtKB Acc	Q87VE0
UniProtKB ID	Q87VE0_PSESM
UniRef100	UniRef100_Q87VE0
UniRef50	UniRef50_D7HU66
UniRef90	UniRef90_D7HU66

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipopolysaccharide core biosynthesis protein
Synonyms
Evidence for Translation
Charge (pH 7)	16.13
Kyte-Doolittle Hydrophobicity Value	-0.537
Molecular Weight (kDa)	28.6
Isoelectric Point (pI)	10.46

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 14 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004615 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4999 Search term: lipopolysaccharide core biosynthesis protein

Human Homologs

References