Pseudomonas syringae pv. tomato DC3000, PSPTO_5002 (waaC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5002
NCBI Old Locus TagPSPTO5002
Name
waaC
Synonym: PSPTO5002
Replicon chromosome
Genomic location 5681121 - 5682185 (- strand)

Cross-References

RefSeq NP_794735.1
GI 28872116
Entrez 1186687
INSDC AAO58430.1
NCBI Locus Tag PSPTO_5002
NCBI Old Locus Tag PSPTO5002
UniParc UPI00000094FF
UniProtKB Acc Q87VD7
UniProtKB ID Q87VD7_PSESM
UniRef100 UniRef100_Q87VD7
UniRef50 UniRef50_P24173
UniRef90 UniRef90_Q48P56

Product

Feature Type CDS
Coding Frame 1
Product Name
lipopolysaccharide heptosyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) 9.01
Kyte-Doolittle Hydrophobicity Value -0.138
Molecular Weight (kDa) 39.3
Isoelectric Point (pI) 9.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 262 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004618 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5002
Search term: waaC

Human Homologs

References

No references are associated with this feature.