Pseudomonas syringae pv. tomato DC3000, PSPTO_5007 (dbpA)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5007
NCBI Old Locus Tag	PSPTO5007
Name	dbpA Synonym: PSPTO5007
Replicon	chromosome
Genomic location	5691491 - 5692870 (+ strand)

Cross-References

RefSeq	NP_794740.1
GI	28872121
Entrez	1186692
INSDC	AAO58435.1
NCBI Locus Tag	PSPTO_5007
NCBI Old Locus Tag	PSPTO5007
UniParc	UPI0000009504
UniProtKB Acc	Q87VD2
UniProtKB ID	Q87VD2_PSESM
UniRef100	UniRef100_Q87VD2
UniRef50	UniRef50_P21693
UniRef90	UniRef90_Q4ZZ36

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-independent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7)	4.00
Kyte-Doolittle Hydrophobicity Value	-0.024
Molecular Weight (kDa)	49.8
Isoelectric Point (pI)	8.14

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 607 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000446 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5007 Search term: dbpA Search term: ATP-independent RNA helicase DbpA

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000463561 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.3e-58 Percent Identity: 37.9
Ensembl 110, assembly GRCh38.p14	ENSP00000374574 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.3e-58 Percent Identity: 37.9
Ensembl 110, assembly GRCh38.p14	ENSP00000352308 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.3e-58 Percent Identity: 37.9
Ensembl 110, assembly GRCh38.p14	ENSP00000464050 DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676] E-value: 3.3e-58 Percent Identity: 37.9

References