Pseudomonas syringae pv. tomato DC3000, PSPTO_5070

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5070
NCBI Old Locus Tag	PSPTO5070
Name	Synonym: PSPTO5070
Replicon	chromosome
Genomic location	5774194 - 5776083 (+ strand)

Cross-References

RefSeq	NP_794802.1
GI	28872183
Entrez	1186755
INSDC	AAO58497.1
NCBI Locus Tag	PSPTO_5070
NCBI Old Locus Tag	PSPTO5070
UniParc	UPI0000009541
UniProtKB Acc	Q87V71
UniProtKB ID	Q87V71_PSESM
UniRef100	UniRef100_Q87V71
UniRef50	UniRef50_Q4K4H4
UniRef90	UniRef90_Q48PB7

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent RNA helicase rhlE
Synonyms
Evidence for Translation
Charge (pH 7)	28.10
Kyte-Doolittle Hydrophobicity Value	-0.653
Molecular Weight (kDa)	68.1
Isoelectric Point (pI)	10.77

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 639 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000419 (525 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5070 Search term: ATP-dependent RNA helicase rhlE

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000494518 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000496663 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000487062 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000494040 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000496222 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000478443 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000496052 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000486306 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000493819 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000487224 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000486443 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000382840 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000486720 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000496524 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000392494 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000495377 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000486514 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000493475 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3
Ensembl 110, assembly GRCh38.p14	ENSP00000486516 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 2.0e-66 Percent Identity: 41.3

References