Pseudomonas syringae pv. tomato DC3000, PSPTO_5391

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5391
NCBI Old Locus TagPSPTO5391
Name
Synonym: PSPTO5391
Replicon chromosome
Genomic location 6121092 - 6122366 (- strand)

Cross-References

RefSeq NP_795118.1
GI 28872499
Entrez 1187078
INSDC AAO58813.1
NCBI Locus Tag PSPTO_5391
NCBI Old Locus Tag PSPTO5391
UniParc UPI0000009675
UniProtKB Acc Q87UB4
UniProtKB ID Q87UB4_PSESM
UniRef100 UniRef100_Q87UB4
UniRef50 UniRef50_W8YMV7
UniRef90 UniRef90_S3MM29

Product

Feature Type CDS
Coding Frame 1
Product Name
outer membrane porin, OprD family
Synonyms
Evidence for Translation
Charge (pH 7) -9.51
Kyte-Doolittle Hydrophobicity Value -0.453
Molecular Weight (kDa) 46.3
Isoelectric Point (pI) 4.74

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 15 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002810 (518 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5391

Human Homologs

References

No references are associated with this feature.