Pseudomonas syringae pv. tomato DC3000, PSPTO_5418

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5418
NCBI Old Locus Tag	PSPTO5418
Name	Synonym: PSPTO5418
Replicon	chromosome
Genomic location	6157343 - 6160921 (- strand)

Cross-References

RefSeq	NP_795145.1
GI	28872526
Entrez	1187105
INSDC	AAO58840.1
NCBI Locus Tag	PSPTO_5418
NCBI Old Locus Tag	PSPTO5418
UniParc	UPI000000968E
UniProtKB Acc	Q87U89
UniProtKB ID	Q87U89_PSESM
UniRef100	UniRef100_Q87U89
UniRef50	UniRef50_G8Q735
UniRef90	UniRef90_Q87U89

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	15.34
Kyte-Doolittle Hydrophobicity Value	-0.358
Molecular Weight (kDa)	135.5
Isoelectric Point (pI)	9.40

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 104 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000076 (865 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5418

Human Homologs

References