Pseudomonas syringae pv. tomato DC3000, PSPTO_5420

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5420
NCBI Old Locus TagPSPTO5420
Name
Synonym: PSPTO5420
Replicon chromosome
Genomic location 6161765 - 6163096 (- strand)

Cross-References

RefSeq NP_795147.1
GI 28872528
Entrez 1187107
INSDC AAO58842.1
NCBI Locus Tag PSPTO_5420
NCBI Old Locus Tag PSPTO5420
UniParc UPI0000009690
UniProtKB Acc Q87U87
UniProtKB ID Q87U87_PSESM
UniRef100 UniRef100_Q87U87
UniRef50 UniRef50_Q9I358
UniRef90 UniRef90_I4Y4Q8

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.54
Kyte-Doolittle Hydrophobicity Value -0.217
Molecular Weight (kDa) 49.7
Isoelectric Point (pI) 6.47

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 108 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000078 (854 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5420

Human Homologs

References

No references are associated with this feature.