Pseudomonas syringae pv. tomato DC3000, PSPTO_5426

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5426
NCBI Old Locus Tag	PSPTO5426
Name	Synonym: PSPTO5426
Replicon	chromosome
Genomic location	6169237 - 6170244 (- strand)

Cross-References

RefSeq	NP_795153.1
GI	28872534
Entrez	1187113
INSDC	AAO58848.1
NCBI Locus Tag	PSPTO_5426
NCBI Old Locus Tag	PSPTO5426
UniParc	UPI0000009696
UniProtKB Acc	Q87U81
UniProtKB ID	Q87U81_PSESM
UniRef100	UniRef100_Q87U81
UniRef50	UniRef50_G8Q742
UniRef90	UniRef90_A0A031GCN6

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-2.20
Kyte-Doolittle Hydrophobicity Value	-0.285
Molecular Weight (kDa)	38.5
Isoelectric Point (pI)	6.65

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 101 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000088 (1157 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5426

Human Homologs

References