Pseudomonas syringae pv. tomato DC3000, PSPTO_5427

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5427
NCBI Old Locus Tag	PSPTO5427
Name	Synonym: PSPTO5427
Replicon	chromosome
Genomic location	6170208 - 6171761 (- strand)

Cross-References

RefSeq	NP_795154.1
GI	28872535
Entrez	1187114
INSDC	AAO58849.1
NCBI Locus Tag	PSPTO_5427
NCBI Old Locus Tag	PSPTO5427
UniParc	UPI0000009697
UniProtKB Acc	Q87U80
UniProtKB ID	Q87U80_PSESM
UniRef100	UniRef100_Q87U80
UniRef50	UniRef50_Q9I365
UniRef90	UniRef90_I4Y4P8

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-6.07
Kyte-Doolittle Hydrophobicity Value	-0.228
Molecular Weight (kDa)	58.8
Isoelectric Point (pI)	6.21

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 103 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000087 (1217 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5427

Human Homologs

References