Pseudomonas syringae pv. tomato DC3000, PSPTO_5435 (hcp-2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5435
NCBI Old Locus TagPSPTO5435
Name
hcp-2
Synonym: PSPTO5435
Replicon chromosome
Genomic location 6181106 - 6181624 (+ strand)

Cross-References

RefSeq NP_795162.1
GI 28872543
Entrez 1187122
INSDC AAO58857.1
NCBI Locus Tag PSPTO_5435
NCBI Old Locus Tag PSPTO5435
UniParc UPI000000969E
UniProtKB Acc Q87U73
UniProtKB ID Q87U73_PSESM
UniRef100 UniRef100_Q87U73
UniRef50 UniRef50_Q9HI36
UniRef90 UniRef90_Q9HI36

Product

Feature Type CDS
Coding Frame 1
Product Name
secreted protein Hcp
Synonyms
Evidence for Translation
Charge (pH 7) -5.12
Kyte-Doolittle Hydrophobicity Value -0.483
Molecular Weight (kDa) 19.1
Isoelectric Point (pI) 5.80

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3HE1 structural genomics, unknown function 05/07/09 Secreted protein Hcp3 from Pseudomonas aeruginosa. Pseudomonas aeruginosa 2.098 X-RAY DIFFRACTION 93.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 72 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000260 (995 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5435
Search term: hcp-2

Human Homologs

References

No references are associated with this feature.