Pseudomonas syringae pv. tomato DC3000, PSPTO_5461

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5461
NCBI Old Locus TagPSPTO5461
Name
Synonym: PSPTO5461
Replicon chromosome
Genomic location 6220971 - 6222152 (- strand)

Cross-References

RefSeq NP_795186.1
GI 28872567
Entrez 1187153
INSDC AAO58881.1
NCBI Locus Tag PSPTO_5461
NCBI Old Locus Tag PSPTO5461
UniParc UPI00000096B2
UniProtKB Acc Q87U53
UniProtKB ID Q87U53_PSESM
UniRef100 UniRef100_Q87U53
UniRef50 UniRef50_Q92947
UniRef90 UniRef90_Q4KKG4

Product

Feature Type CDS
Coding Frame 1
Product Name
acyl-CoA dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -7.48
Kyte-Doolittle Hydrophobicity Value -0.143
Molecular Weight (kDa) 43.2
Isoelectric Point (pI) 5.31

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 469 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000438 (528 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5461

Human Homologs

Ensembl 110, assembly GRCh38.p14
glutaryl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4189]
E-value: 2.6e-144
Percent Identity: 64.4
Ensembl 110, assembly GRCh38.p14
glutaryl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4189]
E-value: 2.6e-144
Percent Identity: 64.4

References

No references are associated with this feature.