Pseudomonas fulva 12-X, Psefu_0047

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fulva 12-X
GCF_000213805.1|latest
Locus Tag
Psefu_0047
Name
Replicon chromosome
Genomic location 49953 - 50510 (+ strand)

Cross-References

RefSeq YP_004472128.1
GI 333898255
Entrez 10658020
INSDC AEF20034.1
NCBI Locus Tag Psefu_0047
UniParc UPI00020CC55C
UniProtKB Acc F6ACM7
UniProtKB ID F6ACM7_PSEF1
UniRef100 UniRef100_F6ACM7
UniRef50 UniRef50_Q2P833
UniRef90 UniRef90_F6ACM7

Product

Feature Type CDS
Coding Frame 1
Product Name
ribosome maturation factor rimN
Synonyms
Evidence for Translation
Charge (pH 7) 2.89
Kyte-Doolittle Hydrophobicity Value -0.199
Molecular Weight (kDa) 20.5
Isoelectric Point (pI) 8.78

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 637 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000022 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psefu_0047

Human Homologs

Ensembl 110, assembly GRCh38.p14
yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905]
E-value: 2.8e-08
Percent Identity: 27.2

References

No references are associated with this feature.