Pseudomonas fulva 12-X, Psefu_0250

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fulva 12-X
GCF_000213805.1|latest
Locus Tag
Psefu_0250
Name
Replicon chromosome
Genomic location 283155 - 283643 (- strand)

Cross-References

RefSeq YP_004472328.1
GI 333898455
Entrez 10657730
INSDC AEF20234.1
NCBI Locus Tag Psefu_0250
UniParc UPI00020CCC24
UniProtKB Acc F6AF36
UniProtKB ID F6AF36_PSEF1
UniRef100 UniRef100_F6AF36
UniRef50 UniRef50_Q9I747
UniRef90 UniRef90_Q9I747

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion system effector
Synonyms
Evidence for Translation
Charge (pH 7) -0.32
Kyte-Doolittle Hydrophobicity Value -0.306
Molecular Weight (kDa) 17.3
Isoelectric Point (pI) 6.80

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4KSR PROTEIN TRANSPORT 05/17/13 Crystal Structure of the Vibrio cholerae ATPase GspE Hexamer Pseudomonas aeruginosa; Vibrio cholerae O1 4.2 X-RAY DIFFRACTION 91.3
1Y12 structural genomics, unknown function 11/16/04 Structure of a hemolysin-coregulated protein from Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 1.95 X-RAY DIFFRACTION 91.3
6AP1 TRANSPORT PROTEIN 08/16/17 Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT 3.2 ELECTRON MICROSCOPY 90.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 76 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000084 (750 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psefu_0250

Human Homologs

References

No references are associated with this feature.