Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a629

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a629
Name
Replicon chromosome
Genomic location 784215 - 785222 (- strand)

Cross-References

RefSeq YP_004351781.1
GI 330807319
Entrez 10469482
INSDC AEA66777.1
NCBI Locus Tag PSEBR_a629
UniParc UPI00020418A3
UniProtKB Acc F2KDJ9
UniProtKB ID F2KDJ9_PSEBN
UniRef100 UniRef100_A0A0D0TF83
UniRef50 UniRef50_Q9HUW1
UniRef90 UniRef90_I2BWH3

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA-dihydrouridine synthase B
Synonyms
Evidence for Translation
Charge (pH 7) 1.33
Kyte-Doolittle Hydrophobicity Value -0.028
Molecular Weight (kDa) 36.3
Isoelectric Point (pI) 7.55

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 563 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004481 (553 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a629

Human Homologs

Ensembl 107, assembly GRCh38.p13
dihydrouridine synthase 3 like [Source:HGNC Symbol;Acc:HGNC:26920]
E-value: 3.8e-24
Percent Identity: 31.2
Ensembl 107, assembly GRCh38.p13
dihydrouridine synthase 3 like [Source:HGNC Symbol;Acc:HGNC:26920]
E-value: 3.8e-24
Percent Identity: 31.2

References

No references are associated with this feature.