Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5173

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a5173
Name
Replicon chromosome
Genomic location 6267860 - 6269656 (- strand)

Cross-References

RefSeq YP_004356647.1
GI 330812185
Entrez 10474418
INSDC AEA71643.1
NCBI Locus Tag PSEBR_a5173
UniParc UPI00020411B1
UniProtKB Acc F2KMA0
UniProtKB ID F2KMA0_PSEBN
UniRef100 UniRef100_F2KMA0
UniRef50 UniRef50_D6CM31
UniRef90 UniRef90_W6V1K0

Product

Feature Type CDS
Coding Frame 1
Product Name
dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -5.84
Kyte-Doolittle Hydrophobicity Value -0.070
Molecular Weight (kDa) 64.6
Isoelectric Point (pI) 6.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 434 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000493 (2559 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a5173
Search term: dehydrogenase

Human Homologs

Ensembl 97, assembly GRCh38.p12
acyl-CoA dehydrogenase very long chain [Source:HGNC Symbol;Acc:HGNC:92]
E-value: 1.1e-30
Percent Identity: 29.3
Ensembl 97, assembly GRCh38.p12
acyl-CoA dehydrogenase very long chain [Source:HGNC Symbol;Acc:HGNC:92]
E-value: 1.1e-30
Percent Identity: 29.3
Ensembl 97, assembly GRCh38.p12
acyl-CoA dehydrogenase very long chain [Source:HGNC Symbol;Acc:HGNC:92]
E-value: 1.1e-30
Percent Identity: 29.3

References

No references are associated with this feature.