Pseudomonas sp. UW4, PputUW4_00019 (rimN)

Gene Feature Overview

Strain	Pseudomonas sp. UW4 GCF_000316175.1|latest
Locus Tag	PputUW4_00019
Name	rimN
Replicon	chromosome
Genomic location	20209 - 20766 (+ strand)

Cross-References

RefSeq	YP_007027033.1
GI	426406934
Entrez	14055259
INSDC	AFY17228.1
NCBI Locus Tag	PputUW4_00019
UniParc	UPI0002701A68
UniProtKB Acc	K9NDL0
UniProtKB ID	K9NDL0_9PSED
UniRef100	UniRef100_K9NDL0
UniRef50	UniRef50_Q88RQ9
UniRef90	UniRef90_G8PX86

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA threonylcarbamoyladenosine biosynthesis protein RimN
Synonyms
Evidence for Translation
Charge (pH 7)	-0.35
Kyte-Doolittle Hydrophobicity Value	-0.159
Molecular Weight (kDa)	20.6
Isoelectric Point (pI)	6.79

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 637 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000022 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PputUW4_00019 Search term: rimN Search term: tRNA threonylcarbamoyladenosine biosynthesis protein RimN

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000362135 yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905] E-value: 3.2e-12 Percent Identity: 30.4

References