Pseudomonas sp. UW4, PputUW4_02215
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. UW4
GCF_000316175.1|latest |
| Locus Tag |
PputUW4_02215
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 2595130 - 2596296 (+ strand) |
Cross-References
| RefSeq | YP_007029219.1 |
| GI | 426409120 |
| EC Number | 3.5.1.98 |
| Entrez | 14054975 |
| NCBI Locus Tag | PputUW4_02215 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
histone deacetylase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -0.99 |
| Kyte-Doolittle Hydrophobicity Value | -0.143 |
| Molecular Weight (kDa) | 42116.5 |
| Isoelectric Point (pI) | 6.84 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 444 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001890 (353 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PputUW4_02215
Search term: histone deacetylase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
histone deacetylase 10 [Source:HGNC Symbol;Acc:HGNC:18128]
E-value:
1.3e-39
Percent Identity:
33.6
|
References
No references are associated with this feature.