Pseudomonas sp. UW4, PputUW4_02535 (mexF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. UW4
GCF_000316175.1|latest |
| Locus Tag |
PputUW4_02535
|
| Name |
mexF
|
| Replicon | chromosome |
| Genomic location | 2952740 - 2955919 (- strand) |
Cross-References
| RefSeq | YP_007029535.1 |
| GI | 426409436 |
| Entrez | 14052245 |
| NCBI Locus Tag | PputUW4_02535 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
multidrug efflux RND transporter permease MexF
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -6.67 |
| Kyte-Doolittle Hydrophobicity Value | 0.328 |
| Molecular Weight (kDa) | 114774.1 |
| Isoelectric Point (pI) | 5.93 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| adeF | AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] | ARO:3000777 | protein homolog model | Strict | 1345.1 | 66.86 | 3.2.4 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 489 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000417 (2150 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PputUW4_02535
Search term: mexF
Search term: multidrug efflux RND transporter permease MexF
|
Human Homologs
References
No references are associated with this feature.