Pseudomonas sp. UW4, PputUW4_02633 (prtD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. UW4
GCF_000316175.1|latest |
| Locus Tag |
PputUW4_02633
|
| Name |
prtD
|
| Replicon | chromosome |
| Genomic location | 3082707 - 3084428 (- strand) |
Cross-References
| RefSeq | YP_007029633.1 |
| GI | 426409534 |
| Entrez | 14055893 |
| NCBI Locus Tag | PputUW4_02633 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
type I secretion system ATPase PrtD
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 5.87 |
| Kyte-Doolittle Hydrophobicity Value | 0.318 |
| Molecular Weight (kDa) | 61975.6 |
| Isoelectric Point (pI) | 9.23 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001198 (798 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PputUW4_02633
Search term: prtD
Search term: type I secretion system ATPase PrtD
|
Human Homologs
|
Ensembl
107, assembly
GRCh38.p13
|
ATP binding cassette subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:57]
E-value:
2.3e-21
Percent Identity:
32.7
|
|
Ensembl
107, assembly
GRCh38.p13
|
ATP binding cassette subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:57]
E-value:
2.3e-21
Percent Identity:
32.7
|
|
Ensembl
107, assembly
GRCh38.p13
|
ATP binding cassette subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:57]
E-value:
2.3e-21
Percent Identity:
32.7
|
References
No references are associated with this feature.