Pseudomonas sp. UW4, PputUW4_04106 (rumA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. UW4
GCF_000316175.1|latest |
| Locus Tag |
PputUW4_04106
|
| Name |
rumA
|
| Replicon | chromosome |
| Genomic location | 4720691 - 4722043 (- strand) |
Cross-References
| RefSeq | YP_007031103.1 |
| GI | 426411004 |
| EC Number | 2.1.1.190 |
| Entrez | 14054913 |
| NCBI Locus Tag | PputUW4_04106 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
23S rRNA 5-methyluridine methyltransferase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 1.43 |
| Kyte-Doolittle Hydrophobicity Value | -0.149 |
| Molecular Weight (kDa) | 49361.4 |
| Isoelectric Point (pI) | 7.30 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 550 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000899 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PputUW4_04106
Search term: rumA
Search term: 23S rRNA 5-methyluridine methyltransferase
|
Human Homologs
References
No references are associated with this feature.