Pseudomonas protegens Pf-5, PFL_0016

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0016
Name
Replicon chromosome
Genomic location 18432 - 19319 (+ strand)

Cross-References

RefSeq YP_257168.1
GI 70733529
Entrez 3480616
INSDC AAY95434.1
NCBI Locus Tag PFL_0016
UniParc UPI000054CB6E
UniProtKB Acc Q4KKR5
UniProtKB ID Q4KKR5_PSEF5
UniRef100 UniRef100_Q4KKR5
UniRef50 UniRef50_C3KE43
UniRef90 UniRef90_C3KE43

Product

Feature Type CDS
Coding Frame 1
Product Name
lipid A biosynthesis lauroyl acyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) 13.56
Kyte-Doolittle Hydrophobicity Value -0.040
Molecular Weight (kDa) 32.6
Isoelectric Point (pI) 10.05

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 278 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000011 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0016

Human Homologs

References

No references are associated with this feature.