Pseudomonas protegens Pf-5, PFL_0025

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0025
Name
Replicon	chromosome
Genomic location	26911 - 27468 (+ strand)

Cross-References

RefSeq	YP_257177.1
GI	70733538
Entrez	3480625
INSDC	AAY95443.1
NCBI Locus Tag	PFL_0025
UniParc	UPI000054CB77
UniProtKB Acc	Q4KKQ6
UniProtKB ID	TSAC_PSEF5
UniRef100	UniRef100_Q4KKQ6
UniRef50	UniRef50_Q88B46
UniRef90	UniRef90_Q4KKQ6

Product

Feature Type	CDS
Coding Frame	1
Product Name	Sua5/YciO/YrdC/YwlC family protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.89
Kyte-Doolittle Hydrophobicity Value	-0.153
Molecular Weight (kDa)	20.6
Isoelectric Point (pI)	7.58

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 637 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000022 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0025 Search term: Sua5/YciO/YrdC/YwlC family protein

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000362135 yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905] E-value: 6.7e-10 Percent Identity: 27.7

References