Pseudomonas protegens Pf-5, PFL_0027 (hemF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0027
Name
hemF
Replicon chromosome
Genomic location 28678 - 29595 (+ strand)

Cross-References

RefSeq YP_257179.1
GI 70733540
EC Number 1.3.3.3
Entrez 3480627
INSDC AAY95445.1
NCBI Locus Tag PFL_0027
UniParc UPI000054CB79
UniProtKB Acc Q4KKQ4
UniProtKB ID HEM6_PSEF5
UniRef100 UniRef100_Q4KKQ4
UniRef50 UniRef50_P84155
UniRef90 UniRef90_Q4KKQ4

Product

Feature Type CDS
Coding Frame 1
Product Name
coproporphyrinogen III oxidase
Synonyms
Evidence for Translation
Charge (pH 7) -6.71
Kyte-Doolittle Hydrophobicity Value -0.422
Molecular Weight (kDa) 34.4
Isoelectric Point (pI) 5.80

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 278 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000024 (554 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0027
Search term: hemF

Human Homologs

Ensembl 97, assembly GRCh38.p12
coproporphyrinogen oxidase [Source:HGNC Symbol;Acc:HGNC:2321]
E-value: 5.4e-74
Percent Identity: 45.7

References

No references are associated with this feature.