Pseudomonas protegens Pf-5, PFL_0030

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0030
Name
Replicon chromosome
Genomic location 32295 - 33212 (- strand)

Cross-References

RefSeq YP_257182.1
GI 70733543
Entrez 3480630
INSDC AAY95448.1
NCBI Locus Tag PFL_0030
UniParc UPI000054CB7C
UniProtKB Acc Q4KKQ1
UniProtKB ID Q4KKQ1_PSEF5
UniRef100 UniRef100_Q4KKQ1
UniRef50 UniRef50_G8PX81
UniRef90 UniRef90_Q4KKQ1

Product

Feature Type CDS
Coding Frame 1
Product Name
choline ABC transporter periplasmic choline-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) 0.90
Kyte-Doolittle Hydrophobicity Value -0.109
Molecular Weight (kDa) 33.3
Isoelectric Point (pI) 7.56

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 133 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000030 (491 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0030

Human Homologs

References

No references are associated with this feature.