Pseudomonas protegens Pf-5, PFL_0048

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0048
Name
Replicon chromosome
Genomic location 45834 - 46484 (- strand)

Cross-References

RefSeq YP_257200.1
GI 70733561
Entrez 3480648
INSDC AAY95466.1
NCBI Locus Tag PFL_0048
UniParc UPI000054CB8E
UniProtKB Acc Q4KKN3
UniProtKB ID Q4KKN3_PSEF5
UniRef100 UniRef100_Q4KKN3
UniRef50 UniRef50_Q9I767
UniRef90 UniRef90_G8PY43

Product

Feature Type CDS
Coding Frame 1
Product Name
HAD hydrolase
Synonyms
Evidence for Translation
Charge (pH 7) -6.84
Kyte-Doolittle Hydrophobicity Value -0.274
Molecular Weight (kDa) 24.5
Isoelectric Point (pI) 5.55

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 414 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000064 (497 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0048
Search term: HAD hydrolase

Human Homologs

References

No references are associated with this feature.