Pseudomonas protegens Pf-5, PFL_0050 (prlC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0050
Name
prlC
Replicon chromosome
Genomic location 47161 - 49212 (+ strand)

Cross-References

RefSeq YP_257202.2
GI 346642647
EC Number 3.4.15.5
Entrez 3480650
INSDC AAY95468.2
NCBI Locus Tag PFL_0050
UniParc UPI000219FE8F
UniProtKB Acc Q4KKN1
UniProtKB ID Q4KKN1_PSEF5
UniRef100 UniRef100_Q4KKN1
UniRef50 UniRef50_G8PY41
UniRef90 UniRef90_Q4KKN1

Product

Feature Type CDS
Coding Frame 1
Product Name
oligopeptidase A
Synonyms
Evidence for Translation
Charge (pH 7) -25.02
Kyte-Doolittle Hydrophobicity Value -0.248
Molecular Weight (kDa) 75.7
Isoelectric Point (pI) 4.83

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 335 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000066 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0050
Search term: prlC
Search term: oligopeptidase A

Human Homologs

Ensembl 110, assembly GRCh38.p14
thimet oligopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:11793]
E-value: 2.8e-85
Percent Identity: 33.3

References

No references are associated with this feature.