Pseudomonas protegens Pf-5, PFL_0104

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0104
Name
Replicon chromosome
Genomic location 106484 - 107251 (- strand)

Cross-References

RefSeq YP_257256.1
GI 70733616
Entrez 3480703
INSDC AAY95521.1
NCBI Locus Tag PFL_0104
UniParc UPI000054CBC6
UniProtKB Acc Q4KKH7
UniProtKB ID Q4KKH7_PSEF5
UniRef100 UniRef100_Q4KKH7
UniRef50 UniRef50_M5CJ50
UniRef90 UniRef90_Q88RI3

Product

Feature Type CDS
Coding Frame 1
Product Name
TerC family membrane protein
Synonyms
Evidence for Translation
Charge (pH 7) 1.19
Kyte-Doolittle Hydrophobicity Value 0.758
Molecular Weight (kDa) 28.3
Isoelectric Point (pI) 7.89

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 276 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004830 (792 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0104

Human Homologs

References

No references are associated with this feature.