Pseudomonas protegens Pf-5, PFL_0112

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0112
Name
Replicon chromosome
Genomic location 113669 - 115162 (- strand)

Cross-References

RefSeq YP_257264.1
GI 70733624
EC Number 2.8.3.-
Entrez 3480711
INSDC AAY95529.1
NCBI Locus Tag PFL_0112
UniParc UPI000054CBCE
UniProtKB Acc Q4KKG9
UniProtKB ID Q4KKG9_PSEF5
UniRef100 UniRef100_Q4KKG9
UniRef50 UniRef50_B3EY95
UniRef90 UniRef90_K9NCK2

Product

Feature Type CDS
Coding Frame 1
Product Name
succinate CoA transferase
Synonyms
Evidence for Translation
Charge (pH 7) -8.25
Kyte-Doolittle Hydrophobicity Value -0.012
Molecular Weight (kDa) 53.8
Isoelectric Point (pI) 6.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2G39 STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02/17/06 Crystal structure of coenzyme A transferase from Pseudomonas aeruginosa Pseudomonas aeruginosa 2.1 X-RAY DIFFRACTION 90.3

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 242 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004996 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0112

Human Homologs

References

No references are associated with this feature.