Pseudomonas protegens Pf-5, PFL_0116 (gcdR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0116
Name
gcdR
Replicon chromosome
Genomic location 118690 - 119589 (- strand)

Cross-References

RefSeq YP_257268.2
GI 346642654
Entrez 3480715
INSDC AAY95533.2
NCBI Locus Tag PFL_0116
UniParc UPI000219FEA4
UniProtKB Acc Q4KKG5
UniProtKB ID Q4KKG5_PSEF5
UniRef100 UniRef100_Q4KKG5
UniRef50 UniRef50_Q4KKG5
UniRef90 UniRef90_Q4KKG5

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator GcdR
Synonyms
Evidence for Translation
Charge (pH 7) 2.90
Kyte-Doolittle Hydrophobicity Value -0.235
Molecular Weight (kDa) 33861.5
Isoelectric Point (pI) 8.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 490 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000439 (1047 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0116
Search term: gcdR

Human Homologs

References

No references are associated with this feature.