Pseudomonas protegens Pf-5, PFL_0728

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0728
Name
Replicon	chromosome
Genomic location	844496 - 846061 (- strand)

Cross-References

RefSeq	YP_257870.2
GI	346642714
Entrez	3481317
INSDC	AAY96135.2
NCBI Locus Tag	PFL_0728
UniParc	UPI000219FEBA
UniProtKB Acc	Q4KIR3
UniProtKB ID	Q4KIR3_PSEF5
UniRef100	UniRef100_Q4KIR3
UniRef50	UniRef50_D7I5U6
UniRef90	UniRef90_Q4KIR3

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	3.84
Kyte-Doolittle Hydrophobicity Value	-0.009
Molecular Weight (kDa)	56202.9
Isoelectric Point (pI)	7.76

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000134 (908 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0728 Search term: ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000396789 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 5.6e-14 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000411096 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 5.6e-14 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000442634 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 5.6e-14 Percent Identity: 28.8

References