Pseudomonas protegens Pf-5, PFL_1290

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1290
Name
Replicon chromosome
Genomic location 1461222 - 1461821 (- strand)

Cross-References

RefSeq YP_258419.2
GI 346642780
Entrez 3478168
INSDC AAY90575.2
NCBI Locus Tag PFL_1290
UniParc UPI000219FED0
UniProtKB Acc Q4KH64
UniProtKB ID Q4KH64_PSEF5
UniRef100 UniRef100_Q4KH64
UniRef50 UniRef50_M5CV01
UniRef90 UniRef90_Q4KH64

Product

Feature Type CDS
Coding Frame 1
Product Name
short chain dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -1.32
Kyte-Doolittle Hydrophobicity Value 0.139
Molecular Weight (kDa) 21.1
Isoelectric Point (pI) 6.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 147 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001028 (423 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1290

Human Homologs

References

No references are associated with this feature.