Pseudomonas protegens Pf-5, PFL_1329

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1329
Name
Replicon chromosome
Genomic location 1502588 - 1503850 (- strand)

Cross-References

RefSeq YP_258458.1
GI 70728709
Entrez 3478148
INSDC AAY90614.1
NCBI Locus Tag PFL_1329
UniParc UPI000054D074
UniProtKB Acc Q4KH25
UniProtKB ID Q4KH25_PSEF5
UniRef100 UniRef100_Q4KH25
UniRef50 UniRef50_Q88JX6
UniRef90 UniRef90_Q4KH25

Product

Feature Type CDS
Coding Frame 1
Product Name
OprD family outer membrane porin
Synonyms
Evidence for Translation
Charge (pH 7) 1.96
Kyte-Doolittle Hydrophobicity Value -0.427
Molecular Weight (kDa) 46225.3
Isoelectric Point (pI) 8.57

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3JTY TRANSPORT PROTEIN 09/14/09 Crystal structure of a BenF-like porin from Pseudomonas fluorescens Pf-5 PSEUDOMONAS FLUORESCENS PF-5 2.58 X-RAY DIFFRACTION 99.2

Drugs Targeting this Protein

Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.

Drug Name Source Accession Source DB Version Target Accession Target Description Percent Identity Alignment Length E-Value
Lauryl Dimethylamine-N-Oxide DB04147 DrugBank 5.1.4 Q4KH25 Outer membrane porin, OprD family 100.0 420 5.4e-244

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 16 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000239 (1183 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1329

Human Homologs

References

No references are associated with this feature.