Strain |
Pseudomonas protegens Pf-5
GCF_000012265.1|latest |
Locus Tag |
PFL_1329
|
Name |
|
Replicon | chromosome |
Genomic location | 1502588 - 1503850 (- strand) |
RefSeq | YP_258458.1 |
GI | 70728709 |
Entrez | 3478148 |
INSDC | AAY90614.1 |
NCBI Locus Tag | PFL_1329 |
UniParc | UPI000054D074 |
UniProtKB Acc | Q4KH25 |
UniProtKB ID | Q4KH25_PSEF5 |
UniRef100 | UniRef100_Q4KH25 |
UniRef50 | UniRef50_Q88JX6 |
UniRef90 | UniRef90_Q4KH25 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
OprD family outer membrane porin
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 1.96 |
Kyte-Doolittle Hydrophobicity Value | -0.427 |
Molecular Weight (kDa) | 46225.3 |
Isoelectric Point (pI) | 8.57 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
3JTY | TRANSPORT PROTEIN | 09/14/09 | Crystal structure of a BenF-like porin from Pseudomonas fluorescens Pf-5 | Pseudomonas fluorescens Pf-5 | 2.58 | X-RAY DIFFRACTION | 99.2 |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
Lauryl Dimethylamine-N-Oxide | DB04147 | DrugBank | 5.1.4 | Q4KH25 | Outer membrane porin, OprD family | 100.0 | 420 | 5.4e-244 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 16 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000239 (1158 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PFL_1329
Search term: OprD family outer membrane porin
|