Pseudomonas protegens Pf-5, PFL_1875 (sigX)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1875
Name
sigX
Replicon chromosome
Genomic location 2084111 - 2084701 (+ strand)

Cross-References

RefSeq YP_258994.1
GI 70734370
Entrez 3481458
INSDC AAY96275.1
NCBI Locus Tag PFL_1875
UniParc UPI000054D288
UniProtKB Acc Q4KFI9
UniProtKB ID Q4KFI9_PSEF5
UniRef100 UniRef100_A9Q6H9
UniRef50 UniRef50_A4VL64
UniRef90 UniRef90_I2BLX6

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor SigX
Synonyms
Evidence for Translation
Charge (pH 7) 1.87
Kyte-Doolittle Hydrophobicity Value -0.677
Molecular Weight (kDa) 23.2
Isoelectric Point (pI) 8.05

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 471 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003619 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1875
Search term: sigX

Human Homologs

References

No references are associated with this feature.