Pseudomonas protegens Pf-5, PFL_1942 (topA_1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1942
Name
topA_1
Replicon chromosome
Genomic location 2169429 - 2172041 (+ strand)

Cross-References

RefSeq YP_259061.1
GI 70729324
EC Number 5.99.1.2
Entrez 3477574
INSDC AAY91229.1
NCBI Locus Tag PFL_1942
UniParc UPI000054D2CA
UniProtKB Acc Q4KFC2
UniProtKB ID Q4KFC2_PSEF5
UniRef100 UniRef100_Q4KFC2
UniRef50 UniRef50_Q9HZJ5
UniRef90 UniRef90_Q4KFC2

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA topoisomerase I subunit omega
Synonyms
Evidence for Translation
Charge (pH 7) 9.49
Kyte-Doolittle Hydrophobicity Value -0.561
Molecular Weight (kDa) 96.9
Isoelectric Point (pI) 8.33

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 665 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002571 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1942
Search term: topA_1

Human Homologs

References

No references are associated with this feature.