Pseudomonas protegens Pf-5, PFL_2547

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2547
Name
Replicon chromosome
Genomic location 2817591 - 2818958 (- strand)

Cross-References

RefSeq YP_259654.2
GI 346642926
Entrez 3478244
INSDC AAY91820.2
NCBI Locus Tag PFL_2547
UniParc UPI000219FFD5
UniProtKB Acc Q4KDM9
UniProtKB ID Q4KDM9_PSEF5
UniRef100 UniRef100_Q4KDM9
UniRef50 UniRef50_K9NK39
UniRef90 UniRef90_Q4KDM9

Product

Feature Type CDS
Coding Frame 1
Product Name
dihydropyrimidine dehydrogenase subunit A
Synonyms
Evidence for Translation
Charge (pH 7) -9.05
Kyte-Doolittle Hydrophobicity Value -0.069
Molecular Weight (kDa) 49100.4
Isoelectric Point (pI) 6.12

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 547 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000431 (437 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2547

Human Homologs

References

No references are associated with this feature.