Pseudomonas protegens Pf-5, PFL_3004

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3004
Name
Replicon chromosome
Genomic location 3452885 - 3455134 (- strand)

Cross-References

RefSeq YP_260110.1
GI 70730371
Entrez 3476094
INSDC AAY92276.1
NCBI Locus Tag PFL_3004
UniParc UPI000054D6C3
UniProtKB Acc Q4KCC3
UniProtKB ID Q4KCC3_PSEF5
UniRef100 UniRef100_Q4KCC3
UniRef50 UniRef50_Q9I741
UniRef90 UniRef90_Q4KCC3

Product

Feature Type CDS
Coding Frame 1
Product Name
ImpA family type VI secretion-associated protein
Synonyms
Evidence for Translation
Charge (pH 7) -18.63
Kyte-Doolittle Hydrophobicity Value -0.557
Molecular Weight (kDa) 84406.3
Isoelectric Point (pI) 5.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 147 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG020344 (13 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3004

Human Homologs

References

No references are associated with this feature.