Pseudomonas protegens Pf-5, PFL_3361

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_3361
Name
Replicon	chromosome
Genomic location	3881336 - 3882469 (+ strand)

Cross-References

RefSeq	YP_260466.1
GI	70730725
Entrez	3476137
INSDC	AAY92630.1
NCBI Locus Tag	PFL_3361
UniParc	UPI000054D827
UniProtKB Acc	Q4KBB7
UniProtKB ID	Q4KBB7_PSEF5
UniRef100	UniRef100_Q4KBB7
UniRef50	UniRef50_S0ACH9
UniRef90	UniRef90_Q4KBB7

Product

Feature Type	CDS
Coding Frame	1
Product Name	histone deacetylase
Synonyms
Evidence for Translation
Charge (pH 7)	-10.42
Kyte-Doolittle Hydrophobicity Value	-0.028
Molecular Weight (kDa)	40503.7
Isoelectric Point (pI)	5.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 444 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001890 (353 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_3361 Search term: histone deacetylase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000216271 histone deacetylase 10 [Source:HGNC Symbol;Acc:HGNC:18128] E-value: 1.5e-37 Percent Identity: 35.8

References