Pseudomonas protegens Pf-5, PFL_3416

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_3416
Name
Replicon	chromosome
Genomic location	3934830 - 3936467 (+ strand)

Cross-References

RefSeq	YP_260521.1
GI	70730780
Entrez	3477646
INSDC	AAY92685.1
NCBI Locus Tag	PFL_3416
UniParc	UPI000054D85E
UniProtKB Acc	Q4KB62
UniProtKB ID	Q4KB62_PSEF5
UniRef100	UniRef100_Q4KB62
UniRef50	UniRef50_Q39CF5
UniRef90	UniRef90_Q4KB62

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.87
Kyte-Doolittle Hydrophobicity Value	-0.173
Molecular Weight (kDa)	58863.3
Isoelectric Point (pI)	6.91

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 667 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001345 (417 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_3416 Search term: ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000292808 ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72] E-value: 2.6e-30 Percent Identity: 27.9
Ensembl 110, assembly GRCh38.p14	ENSP00000411471 ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72] E-value: 2.6e-30 Percent Identity: 27.9

References