Pseudomonas protegens Pf-5, PFL_3473 (vanR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3473
Name
vanR
Replicon chromosome
Genomic location 3991212 - 3991925 (- strand)

Cross-References

RefSeq YP_260576.1
GI 70730835
Entrez 3475507
INSDC AAY92740.1
NCBI Locus Tag PFL_3473
UniParc UPI000054D895
UniProtKB Acc Q4KB07
UniProtKB ID Q4KB07_PSEF5
UniRef100 UniRef100_Q4KB07
UniRef50 UniRef50_Q4KB07
UniRef90 UniRef90_Q4KB07

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator VanR
Synonyms
Evidence for Translation
Charge (pH 7) -2.34
Kyte-Doolittle Hydrophobicity Value -0.124
Molecular Weight (kDa) 26134.6
Isoelectric Point (pI) 6.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 323 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001218 (1274 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3473
Search term: vanR

Human Homologs

References

No references are associated with this feature.