Pseudomonas protegens Pf-5, PFL_3843

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3843
Name
Replicon chromosome
Genomic location 4444559 - 4444942 (+ strand)

Cross-References

RefSeq YP_260943.1
GI 70731202
Entrez 3476245
INSDC AAY93107.1
NCBI Locus Tag PFL_3843
UniParc UPI000054DA02
UniProtKB Acc Q4K9Z0
UniProtKB ID Q4K9Z0_PSEF5
UniRef100 UniRef100_Q4K9Z0
UniRef50 UniRef50_Q4K9Z0
UniRef90 UniRef90_Q4K9Z0

Product

Feature Type CDS
Coding Frame 1
Product Name
nucleotide pyrophosphohydrolase
Synonyms
Evidence for Translation
Charge (pH 7) -3.80
Kyte-Doolittle Hydrophobicity Value -0.284
Molecular Weight (kDa) 14157.0
Isoelectric Point (pI) 4.72

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 145 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG013889 (143 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3843

Human Homologs

Ensembl 110, assembly GRCh38.p14
dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]
E-value: 3.3e-24
Percent Identity: 47.9

References

No references are associated with this feature.