Pseudomonas protegens Pf-5, PFL_3876 (serS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3876
Name
serS
Replicon chromosome
Genomic location 4473766 - 4475046 (- strand)

Cross-References

RefSeq YP_260976.1
GI 70731235
EC Number 6.1.1.11
Entrez 3478260
INSDC AAY93140.1
NCBI Locus Tag PFL_3876
UniParc UPI000054DA23
UniProtKB Acc Q4K9V7
UniProtKB ID SYS_PSEF5
UniRef100 UniRef100_Q4K9V7
UniRef50 UniRef50_Q8RH11
UniRef90 UniRef90_Q3KA84

Product

Feature Type CDS
Coding Frame 1
Product Name
seryl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -12.93
Kyte-Doolittle Hydrophobicity Value -0.300
Molecular Weight (kDa) 47.1
Isoelectric Point (pI) 4.98

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 651 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002939 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3876
Search term: serS

Human Homologs

Ensembl 110, assembly GRCh38.p14
seryl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:10537]
E-value: 1.1e-52
Percent Identity: 36.7

References

No references are associated with this feature.