Pseudomonas protegens Pf-5, PFL_4070

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4070
Name
Replicon chromosome
Genomic location 4694922 - 4695686 (+ strand)

Cross-References

RefSeq YP_261167.1
GI 70731426
Entrez 3476371
INSDC AAY93331.1
NCBI Locus Tag PFL_4070
UniParc UPI000054DADF
UniProtKB Acc Q4K9B6
UniProtKB ID Q4K9B6_PSEF5
UniRef100 UniRef100_Q4K9B6
UniRef50 UniRef50_Q4K9B6
UniRef90 UniRef90_Q4K9B6

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 6.52
Kyte-Doolittle Hydrophobicity Value -0.134
Molecular Weight (kDa) 28598.7
Isoelectric Point (pI) 8.98

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 190 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG020710 (15 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4070

Human Homologs

References

No references are associated with this feature.