Pseudomonas protegens Pf-5, PFL_4279

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4279
Name
Replicon	chromosome
Genomic location	4973951 - 4974634 (+ strand)

Cross-References

RefSeq	YP_261371.1
GI	70731630
Entrez	3477405
INSDC	AAY93535.1
NCBI Locus Tag	PFL_4279
UniParc	UPI000054DBA9
UniProtKB Acc	Q4K8R2
UniProtKB ID	Q4K8R2_PSEF5
UniRef100	UniRef100_Q4K8R2
UniRef50	UniRef50_A0A0B7DDC9
UniRef90	UniRef90_A0A0B7DDC9

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-8.58
Kyte-Doolittle Hydrophobicity Value	-0.099
Molecular Weight (kDa)	24.5
Isoelectric Point (pI)	4.87

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002712 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4279 Search term: ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000478255 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 7.2e-14 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000342216 ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39] E-value: 7.2e-14 Percent Identity: 28.6
Ensembl 110, assembly GRCh38.p14	ENSP00000444095 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 7.2e-14 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000265724 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 7.2e-14 Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14	ENSP00000394264 ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39] E-value: 7.2e-14 Percent Identity: 28.6

References