Pseudomonas protegens Pf-5, PFL_4280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4280
Name
Replicon chromosome
Genomic location 4974634 - 4977138 (+ strand)

Cross-References

RefSeq YP_261372.1
GI 70731631
Entrez 3477406
INSDC AAY93536.1
NCBI Locus Tag PFL_4280
UniParc UPI000054DBAA
UniProtKB Acc Q4K8R1
UniProtKB ID Q4K8R1_PSEF5
UniRef100 UniRef100_Q4K8R1
UniRef50 UniRef50_G8Q1V7
UniRef90 UniRef90_Q4K8R1

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7) 13.65
Kyte-Doolittle Hydrophobicity Value 0.415
Molecular Weight (kDa) 89429.6
Isoelectric Point (pI) 10.01

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 215 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002711 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4280

Human Homologs

References

No references are associated with this feature.